Transcript: LINC00900:9

Basic information

LNCipedia transcript ID: LINC00900:9 
HGNC Gene Symbol: LINC00900    
HGNC Full Gene Name: long intergenic non-protein coding RNA 900
Ensembl Gene ID: ENSG00000246100
Ensembl Transcript ID: ENST00000499809
Location (hg38): chr11:115754248-115760194
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3322 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499809; ENST00000499809.1; CTC-774J1.2-001; OTTHUMT00000398858.1; NONHSAT024319
Alternative gene names: ENSG00000246100; CTC-774J1.2; ENSG00000246100.2; OTTHUMG00000168216.1; ENSG00000246100.3; LINC00900;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.0843 non-coding 
CPAT coding probability 12.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00900:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CADM1-2:8
3.1 lnc-CADM1-2:8
4.0 LINC00900:9
4.1 LINC00900:9
5.0 LINC00900:9
5.1 LINC00900:9
5.2 LINC00900:9