Transcript: LINC00909:3

Basic information

LNCipedia transcript ID: LINC00909:3 
LNCipedia gene ID: LINC00909
Location (hg38): chr18:74591794-74597835
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3454 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000382649
Alternative gene names: ENSG00000206029; AC116904.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.673 non-coding 
CPAT coding probability 5.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00909:3 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM69C-1:1
3.1 lnc-FAM69C-2:2
4.0 LINC00909:3
4.1 LINC00909:3
5.0 LINC00909:3
5.1 LINC00909:3
5.2 LINC00909:3