Transcript: LINC00909:5

Basic information

LNCipedia transcript ID: LINC00909:5 
HGNC Gene Symbol: LINC00909    
HGNC Full Gene Name: long intergenic non-protein coding RNA 909
Ensembl Gene ID: ENSG00000264247
Ensembl Transcript ID: ENST00000580048
Location (hg38): chr18:74591774-74597824
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3463 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580048.1; RP11-231E4.4-001; OTTHUMT00000444897.1
Alternative gene names: ENSG00000264247.1; RP11-231E4.4; OTTHUMG00000179121.1; LINC00909;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.673 non-coding 
CPAT coding probability 5.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00909:5 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM69C-2:3
4.0 LINC00909:5
4.1 LINC00909:5
5.0 LINC00909:5
5.1 LINC00909:5
5.2 LINC00909:5