Transcript: LINC00917:10

Basic information

LNCipedia transcript ID: LINC00917:10 
LNCipedia gene ID: LINC00917
Location (hg38): chr16:86335768-86345679
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1588 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT144196; ENST00000304488.4
Alternative gene names: ENSG00000168367.5; LINC00917;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.8444 non-coding 
CPAT coding probability 18.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00917:10 no no no no

Available literature

  1. Chen (2015), Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC092327.1-1:13
4.0 LINC00917:10
4.1 LINC00917:10
5.0 LINC00917:10
5.1 LINC00917:10
5.2 LINC00917:10