Transcript: LINC00919:3

Basic information

LNCipedia transcript ID: LINC00919:3 
HGNC Gene Symbol: LINC00919    
HGNC Full Gene Name: long intergenic non-protein coding RNA 919
Ensembl Gene ID: ENSG00000260268
Ensembl Transcript ID: ENST00000561513
RefSeq ID: NR_038233
Location (hg38): chr16:52083065-52085109
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1658 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00024269; ENST00000561513.1; RP11-152O14.2-001; OTTHUMT00000422564.1; NONHSAT142502; NR_038233; ENST00000561513.5; NR_038233.1
Alternative gene names: XLOC_011941; linc-SALL1-2; ENSG00000260268.1; RP11-152O14.2; OTTHUMG00000173235.1; LINC00919; ENSG00000260268.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.2002 non-coding 
CPAT coding probability 15.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00919:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-152O14.2.1-1:3
3.1 lnc-RP11-152O14.2.1-1:3
4.0 LINC00919:3
4.1 LINC00919:3
5.0 LINC00919:3
5.1 LINC00919:3
5.2 LINC00919:3