Transcript: LINC00923:1

Basic information

LNCipedia transcript ID: LINC00923:1 ?
HGNC Gene Symbol: LINC00923    ?
HGNC Full Gene Name: long intergenic non-protein coding RNA 923
Location (hg19): chr15:98285543-98417780
Strand: -
Class: intergenic
Transcript size: 1941 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000503768
Alternative gene names: ENSG00000251209; AC024651.1;


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score 14.5215 non-coding ?
CPAT coding probability 21.77% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
LINC00923:1 no no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -665.64
Randfold P-value: 0.004

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-34a-3p 86.23
hsa-miR-557 72.13
hsa-miR-452-3p 71.27
hsa-miR-466 71.05
hsa-miR-4663 68.37
hsa-miR-4709-3p 67.73
hsa-miR-548aj-5p 66.94
hsa-miR-548g-5p 66.94
hsa-miR-548x-5p 66.94
hsa-miR-3607-3p 65.69
hsa-miR-507 65.34
hsa-miR-3686 59.22
hsa-miR-4698 55.97
hsa-miR-4700-3p 54.55
hsa-miR-4789-3p 54.47
hsa-miR-3920 53.85
hsa-miR-3116 53.78
hsa-miR-1254 53.27
hsa-miR-483-3p 51.30
hsa-miR-33a-3p 51.29
hsa-miR-3977 50.76

Available literature

  1. Parsa (2016), Genome-Wide Association of CKD Progression: The Chronic Renal Insufficiency Cohort Study., Journal of the American Society of Nephrology : JASN


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-RP11-82I10.1.1-1:1
4.0 LINC00923:1
3.1 lnc-RP11-82I10.1.1-1:1