Transcript: LINC00923:5

Basic information

LNCipedia transcript ID: LINC00923:5 ?
HGNC Gene Symbol: LINC00923    ?
HGNC Full Gene Name: long intergenic non-protein coding RNA 923
Location (hg19): chr15:98285846-98417659
Strand: -
Class: intergenic
Transcript size: 1345 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Refseq - Dec 2014
Alternative transcript names: ENST00000503874; NR_024173
Alternative gene names: ENSG00000251209; AC024651.1;


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score 14.5215 non-coding ?
CPAT coding probability 42.15% coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: no

Locus conservation

Locus conservation?
LINC00923:5 no no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -493
Randfold P-value: 0.051

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-34a-3p 88.24
hsa-miR-4709-3p 67.73
hsa-miR-3607-3p 65.69
hsa-miR-4698 63.42
hsa-miR-1301 63.17
hsa-miR-4677-5p 62.10
hsa-miR-4663 60.62
hsa-miR-5047 59.30
hsa-miR-3686 59.22
hsa-miR-483-3p 57.36
hsa-miR-548aj-5p 56.97
hsa-miR-548g-5p 56.97
hsa-miR-548x-5p 56.97
hsa-miR-3692-3p 54.01
hsa-miR-3116 53.78
hsa-miR-1254 53.27
hsa-miR-450b-5p 52.73
hsa-miR-4436a 51.25
hsa-miR-3680-5p 50.09
hsa-miR-4530 50.00

Available literature

  1. Parsa (2016), Genome-Wide Association of CKD Progression: The Chronic Renal Insufficiency Cohort Study., Journal of the American Society of Nephrology : JASN


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-RP11-82I10.1.1-1:2
4.0 LINC00923:5
3.1 lnc-RP11-82I10.1.1-1:2