Transcript: LINC00926:20

Basic information

LNCipedia transcript ID: LINC00926:20 
HGNC Gene Symbol: LINC00926    
HGNC Full Gene Name: long intergenic non-protein coding RNA 926
Ensembl Gene ID: ENSG00000247982
Ensembl Transcript ID: ENST00000502027
Location (hg38): chr15:57304725-57307758
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2141 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000502027; TCONS_00023264; ENST00000502027.1; RP11-358M11.2-002; OTTHUMT00000419623.1; NONHSAT044066
Alternative gene names: ENSG00000247982; XLOC_011264; linc-CGNL1-2; AC016525.1; ENSG00000247982.2; RP11-358M11.2; OTTHUMG00000172641.1; LINC00926; ENSG00000247982.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.8007 non-coding 
CPAT coding probability 6.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00926:20 no no no no

Available literature

  1. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCF12-1:17
3.1 lnc-TCF12-1:17
4.0 LINC00926:20
4.1 LINC00926:20
5.0 LINC00926:20
5.1 LINC00926:20
5.2 LINC00926:20