Transcript: LINC00927:33

Basic information

LNCipedia transcript ID: LINC00927:33 
LNCipedia gene ID: LINC00927
Location (hg38): chr15:80403399-80403998
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 477 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024187; NONHSAT047703
Alternative gene names: XLOC_011546; linc-BCL2A1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.0972 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00927:33 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights
  3. Zhao (2014), Expression profiles and initial confirmation of long noncoding RNAs in Chinese patients with pulmonary adenocarcinoma., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-210M15.2.1-1:2
3.1 lnc-RP11-210M15.2.1-1:2
4.0 lnc-RP11-210M15.2.1-3:21
4.1 lnc-RP11-210M15.2.1-3:21
5.0 lnc-RP11-210M15.2.1-3:21
5.1 LINC00927:4
5.2 LINC00927:33