Transcript: LINC00927:36

Basic information

LNCipedia transcript ID: LINC00927:36 
LNCipedia gene ID: LINC00927
Ensembl Gene ID: ENSG00000259495
Ensembl Transcript ID: ENST00000559267
Location (hg38): chr15:80344853-80398007
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 436 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT047695; ENST00000559267.1
Alternative gene names: ENSG00000259495.2; RP11-210M15.2; AC016705.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.8067 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00927:36 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights
  3. Zhao (2014), Expression profiles and initial confirmation of long noncoding RNAs in Chinese patients with pulmonary adenocarcinoma., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-210M15.2.1-3:14
4.0 lnc-RP11-210M15.2.1-3:14
4.1 lnc-RP11-210M15.2.1-3:14
5.0 lnc-RP11-210M15.2.1-3:14
5.1 LINC00927:7
5.2 LINC00927:36