Transcript: LINC00927:42

Basic information

LNCipedia transcript ID: LINC00927:42 
LNCipedia gene ID: LINC00927
RefSeq ID: NR_033833
Location (hg38): chr15:80263068-80341805
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2915 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT047687; NR_033833; NR_033833.1
Alternative gene names: LINC00927


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.2751 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00927:42 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights
  3. Zhao (2014), Expression profiles and initial confirmation of long noncoding RNAs in Chinese patients with pulmonary adenocarcinoma., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-210M15.2.1-3:16
4.0 lnc-RP11-210M15.2.1-3:16
4.1 lnc-RP11-210M15.2.1-3:16
5.0 lnc-RP11-210M15.2.1-3:16
5.1 LINC00927:13
5.2 LINC00927:42