Transcript: LINC00927:53

Basic information

LNCipedia transcript ID: LINC00927:53 
LNCipedia gene ID: LINC00927
RefSeq ID: NR_120317
Location (hg38): chr15:80195479-80252261
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 6943 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120317; NR_120317.1
Alternative gene names: LINC01314


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 786.3384 coding 
CPAT coding probability 3.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00927:53 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights
  3. Zhao (2014), Expression profiles and initial confirmation of long noncoding RNAs in Chinese patients with pulmonary adenocarcinoma., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-210M15.2.1-3:19
4.0 lnc-RP11-210M15.2.1-3:19
4.1 lnc-RP11-210M15.2.1-3:19
5.0 lnc-RP11-210M15.2.1-3:19
5.1 LINC00927:24
5.2 LINC00927:53