Transcript: LINC00927:54

Basic information

LNCipedia transcript ID: LINC00927:54 
LNCipedia gene ID: LINC00927
Location (hg38): chr15:80195484-80252213
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 6890 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000560778.2; RP11-2E17.1-001; OTTHUMT00000416763.3; NONHSAT047684
Alternative gene names: ENSG00000259417.2; RP11-2E17.1; OTTHUMG00000172080.4; LINC01314


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 786.3384 coding 
CPAT coding probability 3.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00927:54 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights
  3. Zhao (2014), Expression profiles and initial confirmation of long noncoding RNAs in Chinese patients with pulmonary adenocarcinoma., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-210M15.2.1-4:1
4.0 lnc-RP11-210M15.2.1-3:26
4.1 lnc-RP11-210M15.2.1-3:26
5.0 lnc-RP11-210M15.2.1-3:26
5.1 LINC00927:25
5.2 LINC00927:54