Transcript: LINC00939:1

Basic information

LNCipedia transcript ID: LINC00939:1 
HGNC Gene Symbol: LINC00939    
HGNC Full Gene Name: long intergenic non-protein coding RNA 939
Ensembl Gene ID: ENSG00000249267
Ensembl Transcript ID: ENST00000545784
Location (hg38): chr12:125958688-125983374
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2078 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000545784; ENST00000545784.1; RP5-916L7.1-003; OTTHUMT00000399907.1; NR_034132; ENST00000545784.5
Alternative gene names: ENSG00000249267; RP5-916L7.1; ENSG00000249267.2; OTTHUMG00000168492.1; LINC00939; ENSG00000249267.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.1124 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00939:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DHX37-3:1
3.1 lnc-DHX37-3:2
4.0 LINC00939:1
4.1 LINC00939:1
5.0 LINC00939:1
5.1 LINC00939:1
5.2 LINC00939:1