Transcript: LINC00941:1

Basic information

LNCipedia transcript ID: LINC00941:1 
LNCipedia gene ID: LINC00941
Location (hg38): chr12:30795043-30796206
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1164 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000415632.1; RP11-77I22.3-201; NONHSAT027514
Alternative gene names: ENSG00000235884.2; RP11-77I22.3; OTTHUMG00000169309.1; LINC00941;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.8625 non-coding 
CPAT coding probability 29.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00941:1 no no no no

Available literature

  1. Yan (2017), Mesenchymal Stem Cells Promote Hepatocarcinogenesis via lncRNA-MUF Interaction with ANXA2 and miR-34a., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSPAN11-2:1
4.0 LINC00941:1
4.1 LINC00941:1
5.0 LINC00941:1
5.1 LINC00941:1
5.2 LINC00941:1