Transcript: LINC00941:5

Basic information

LNCipedia transcript ID: LINC00941:5 
HGNC Gene Symbol: LINC00941    
HGNC Full Gene Name: long intergenic non-protein coding RNA 941
Ensembl Gene ID: ENSG00000235884
Ensembl Transcript ID: ENST00000547804
Location (hg38): chr12:30795931-30802711
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1645 bp
Exons: 5
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00020185; ENST00000547804.1; RP11-77I22.3-001; OTTHUMT00000403387.1
Alternative gene names: XLOC_009702; linc-TSPAN11-1; ENSG00000235884.2; RP11-77I22.3; OTTHUMG00000169309.1; LINC00941; ENSG00000235884.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.615 non-coding 
CPAT coding probability 15.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00941:5 no no no no

Available literature

  1. Yan (2017), Mesenchymal Stem Cells Promote Hepatocarcinogenesis via lncRNA-MUF Interaction with ANXA2 and miR-34a., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSPAN11-2:1
3.1 lnc-TSPAN11-2:3
4.0 LINC00941:5
4.1 LINC00941:5
5.0 LINC00941:5
5.1 LINC00941:5
5.2 LINC00941:5