Transcript: LINC00941:6

Basic information

LNCipedia transcript ID: LINC00941:6 
LNCipedia gene ID: LINC00941
Location (hg38): chr12:30796034-30802259
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 919 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020370; NONHSAT027517
Alternative gene names: XLOC_009702; linc-TSPAN11-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.615 non-coding 
CPAT coding probability 16.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00941:6 no no no no

Available literature

  1. Yan (2017), Mesenchymal Stem Cells Promote Hepatocarcinogenesis via lncRNA-MUF Interaction with ANXA2 and miR-34a., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSPAN11-2:2
3.1 lnc-TSPAN11-2:4
4.0 LINC00941:6
4.1 LINC00941:6
5.0 LINC00941:6
5.1 LINC00941:6
5.2 LINC00941:6