Transcript: LINC00941:8

Basic information

LNCipedia transcript ID: LINC00941:8 
LNCipedia gene ID: LINC00941
Location (hg38): chr12:30799959-30801912
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 343 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00021094
Alternative gene names: XLOC_009702; linc-TSPAN11-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.615 non-coding 
CPAT coding probability 19.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00941:8 no no no no

Available literature

  1. Yan (2017), Mesenchymal Stem Cells Promote Hepatocarcinogenesis via lncRNA-MUF Interaction with ANXA2 and miR-34a., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSPAN11-2:3
3.1 lnc-TSPAN11-2:5
4.0 LINC00941:8
4.1 LINC00941:8
5.0 LINC00941:8
5.1 LINC00941:8
5.2 LINC00941:8