Transcript: LINC00941:9

Basic information

LNCipedia transcript ID: LINC00941:9 
HGNC Gene Symbol: LINC00941    
HGNC Full Gene Name: long intergenic non-protein coding RNA 941
Ensembl Gene ID: ENSG00000235884
Ensembl Transcript ID: ENST00000551972
Location (hg38): chr12:30800211-30801997
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 688 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551972.1; RP11-77I22.3-003; OTTHUMT00000403388.1; NONHSAT027519
Alternative gene names: ENSG00000235884.2; RP11-77I22.3; OTTHUMG00000169309.1; LINC00941; ENSG00000235884.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.615 non-coding 
CPAT coding probability 16.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00941:9 no no no no

Available literature

  1. Yan (2017), Mesenchymal Stem Cells Promote Hepatocarcinogenesis via lncRNA-MUF Interaction with ANXA2 and miR-34a., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSPAN11-2:6
4.0 LINC00941:9
4.1 LINC00941:9
5.0 LINC00941:9
5.1 LINC00941:9
5.2 LINC00941:9