Transcript: LINC00942:1

Basic information

LNCipedia transcript ID: LINC00942:1 
HGNC Gene Symbol: LINC00942    
HGNC Full Gene Name: long intergenic non-protein coding RNA 942
Ensembl Gene ID: ENSG00000249628
Ensembl Transcript ID: ENST00000515614
Location (hg38): chr12:1500525-1507318
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2417 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515614; ENST00000515614.2; RP3-340I3.1-001; OTTHUMT00000398456.1; NONHSAT025398
Alternative gene names: ENSG00000249628; RP3-340I3.1; ENSG00000249628.2; OTTHUMG00000168151.1; LINC00942;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.4033 non-coding 
CPAT coding probability 2.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00942:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FBXL14-1:1
3.1 lnc-FBXL14-1:1
4.0 LINC00942:1
4.1 LINC00942:1
5.0 LINC00942:1
5.1 LINC00942:1
5.2 LINC00942:1