Transcript: LINC00943:2

Basic information

LNCipedia transcript ID: LINC00943:2 
HGNC Gene Symbol: LINC00943    
HGNC Full Gene Name: long intergenic non-protein coding RNA 943
Ensembl Gene ID: ENSG00000189238
Ensembl Transcript ID: ENST00000541359
Location (hg38): chr12:126726562-126743044
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 676 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000541359; ENST00000541359.1; RP11-173C20.1-005; OTTHUMT00000399864.1; NONHSAT031804
Alternative gene names: ENSG00000189238; RP11-173C20.1; ENSG00000189238.4; OTTHUMG00000168479.1; LINC00943; ENSG00000189238.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.0622 non-coding 
CPAT coding probability 17.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00943:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM132B-11:2
3.1 lnc-TMEM132B-11:2
4.0 LINC00943:2
4.1 LINC00943:2
5.0 LINC00943:2
5.1 LINC00943:2
5.2 LINC00943:2