Transcript: LINC00944:1

Basic information

LNCipedia transcript ID: LINC00944:1 
HGNC Gene Symbol: LINC00944    
HGNC Full Gene Name: long intergenic non-protein coding RNA 944
Ensembl Gene ID: ENSG00000256128
Ensembl Transcript ID: ENST00000540684
Location (hg38): chr12:126729787-126772411
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 888 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000540684; ENST00000540684.1; RP11-173C20.2-001; OTTHUMT00000399870.1; NONHSAT031806; ENST00000540684.5
Alternative gene names: ENSG00000256128; RP11-173C20.2; ENSG00000256128.1; OTTHUMG00000168480.1; LINC00944; ENSG00000256128.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.6208 non-coding 
CPAT coding probability 22.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00944:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DHX37-10:1
3.1 lnc-DHX37-10:1
4.0 LINC00944:1
4.1 LINC00944:1
5.0 LINC00944:1
5.1 LINC00944:1
5.2 LINC00944:1