Transcript: LINC00945:1

Basic information

LNCipedia transcript ID: LINC00945:1 
LNCipedia gene ID: LINC00945
Location (hg38): chr21:33057828-33064983
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 758 bp
Exons: 5
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT081762; FPKM1_group_20094_transcript_1
Alternative gene names: TCONS_00028834


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.5864 non-coding 
CPAT coding probability 1.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00945:1 no no no no

Available literature

  1. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OLIG1-1:2
4.0 LINC00945:1
4.1 LINC00945:1
5.0 LINC00945:1
5.1 LINC00945:1
5.2 LINC00945:1