Transcript: LINC00945:2

Basic information

LNCipedia transcript ID: LINC00945:2 
HGNC Gene Symbol: LINC00945    
HGNC Full Gene Name: long intergenic non-protein coding RNA 945
Ensembl Gene ID: ENSG00000232539
Ensembl Transcript ID: ENST00000453716
Location (hg38): chr21:33057829-33064983
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 753 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028834; ENST00000453716; ENST00000453716.1; AP000288.2-001; OTTHUMT00000139726.1; NONHSAT081763
Alternative gene names: XLOC_013919; linc-OLIG1; ENSG00000232539; AP000288.2; ENSG00000232539.1; OTTHUMG00000065060.1; LINC00945; TCONS_00028834


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.5213 non-coding 
CPAT coding probability 1.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00945:2 no no no no

Available literature

  1. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OLIG1-1:1
3.1 lnc-OLIG1-1:1
4.0 LINC00945:2
4.1 LINC00945:2
5.0 LINC00945:2
5.1 LINC00945:2
5.2 LINC00945:2