Transcript: LINC00945:3

Basic information

LNCipedia transcript ID: LINC00945:3 
LNCipedia gene ID: LINC00945
RefSeq ID: NR_104056
Location (hg38): chr21:33057829-33065079
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 849 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104056; NR_104056.1
Alternative gene names: TCONS_00028834; LINC00945


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.5213 non-coding 
CPAT coding probability 1.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00945:3 no no no no

Available literature

  1. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OLIG1-1:3
4.0 LINC00945:3
4.1 LINC00945:3
5.0 LINC00945:3
5.1 LINC00945:3
5.2 LINC00945:3