Transcript: LINC00958:1

Basic information

LNCipedia transcript ID: LINC00958:1 
HGNC Gene Symbol: LINC00958    
HGNC Full Gene Name: long intergenic non-protein coding RNA 958
Ensembl Gene ID: ENSG00000251381
Ensembl Transcript ID: ENST00000504230
Location (hg38): chr11:12979535-12989548
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1558 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504230; TCONS_00019119; ENST00000504230.2; CTC-497E21.4-001; OTTHUMT00000386997.1
Alternative gene names: ENSG00000251381; XLOC_009378; linc-DKK3-3; CTC-497E21.4; ENSG00000251381.2; OTTHUMG00000165904.2; LINC00958; ENSG00000251381.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.2083 non-coding 
CPAT coding probability 1.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00958:1 no no no no

Available literature

  1. Guo (2018), Long Noncoding RNA LINC00958 Accelerates Gliomagenesis Through Regulating miR-203/CDK2., DNA Cell Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTBD10-3:1
3.1 lnc-BTBD10-3:1
4.0 LINC00958:1
4.1 LINC00958:1
5.0 LINC00958:1
5.1 LINC00958:1
5.2 LINC00958:1