Transcript: LINC00958:4

Basic information

LNCipedia transcript ID: LINC00958:4 
LNCipedia gene ID: LINC00958
Location (hg38): chr11:12962510-12989547
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 453 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000527945; ENST00000527945.1; CTC-497E21.4-007; OTTHUMT00000387314.1; NONHSAT018078
Alternative gene names: ENSG00000251381; CTC-497E21.4; ENSG00000251381.2; OTTHUMG00000165904.2; LINC00958;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.5841 non-coding 
CPAT coding probability 9.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00958:4 no no no no

Available literature

  1. Guo (2018), Long Noncoding RNA LINC00958 Accelerates Gliomagenesis Through Regulating miR-203/CDK2., DNA Cell Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTBD10-3:3
3.1 lnc-BTBD10-3:3
4.0 LINC00958:4
4.1 LINC00958:4
5.0 LINC00958:4
5.1 LINC00958:4
5.2 LINC00958:4