Transcript: LINC00960:4

Basic information

LNCipedia transcript ID: LINC00960:4 
HGNC Gene Symbol: LINC00960    
HGNC Full Gene Name: long intergenic non-protein coding RNA 960
Ensembl Gene ID: ENSG00000242516
Ensembl Transcript ID: ENST00000463183
RefSeq ID: NR_040004
Location (hg38): chr3:75672391-75679303
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1333 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000463183; ENST00000463183.1; RP11-413E6.8-001; OTTHUMT00000352691.1; NR_040004; NR_040004.1
Alternative gene names: ENSG00000242516; RP11-413E6.8; ENSG00000242516.1; OTTHUMG00000158961.1; LINC00960;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.5573 non-coding 
CPAT coding probability 13.20% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.12195122
orfFrame6.099404989
seqAAMFFSWMVLMVVDVLQCLDIKILGMQHHMRGLKNKIKKEKRTQS

In stringent set: no

Locus conservation

Locus conservation?
LINC00960:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FRG2C-1:1
3.1 lnc-FRG2C-1:1
4.0 LINC00960:4
4.1 LINC00960:4
5.0 LINC00960:4
5.1 LINC00960:4
5.2 LINC00960:4