Transcript: LINC00963:23

Basic information

LNCipedia transcript ID: LINC00963:23 
HGNC Gene Symbol: LINC00963    
HGNC Full Gene Name: long intergenic non-protein coding RNA 963
Ensembl Gene ID: ENSG00000204054
Ensembl Transcript ID: ENST00000624009
Location (hg38): chr9:129491089-129508516
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 663 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000624009.3
Alternative gene names: ENSG00000204054.12; LINC00963; ; ENSG00000204054.13


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -135.6352 non-coding 
CPAT coding probability 4.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00963:23 no no no no

Available literature

  1. Chen (2018), Effects of Long Non-Coding RNA LINC00963 on Renal Interstitial Fibrosis and Oxidative Stress of Rats with Chronic Renal Failure via the Foxo Signaling Pathway., Cell. Physiol. Biochem.
  2. Yu (2017), MetaLnc9 Facilitates Lung Cancer Metastasis via a PGK1-Activated AKT/mTOR Pathway., Cancer Res.
  3. Wang (2014), Linc00963: a novel, long non-coding RNA involved in the transition of prostate cancer from androgen-dependence to androgen-independence., Int. J. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00963:23
4.1 LINC00963:23
5.0 LINC00963:23
5.1 LINC00963:23
5.2 LINC00963:23