Transcript: LINC00963:5

Basic information

LNCipedia transcript ID: LINC00963:5 
LNCipedia gene ID: LINC00963
RefSeq ID: NR_038955
Location (hg38): chr9:129488660-129513686
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2119 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT135073; NR_038955; NR_038955.1
Alternative gene names: ; LINC00963


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.2683 non-coding 
CPAT coding probability 21.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00963:5 no no no no

Available literature

  1. Chen (2018), Effects of Long Non-Coding RNA LINC00963 on Renal Interstitial Fibrosis and Oxidative Stress of Rats with Chronic Renal Failure via the Foxo Signaling Pathway., Cell. Physiol. Biochem.
  2. Yu (2017), MetaLnc9 Facilitates Lung Cancer Metastasis via a PGK1-Activated AKT/mTOR Pathway., Cancer Res.
  3. Wang (2014), Linc00963: a novel, long non-coding RNA involved in the transition of prostate cancer from androgen-dependence to androgen-independence., Int. J. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-METTL11A-3:13
4.0 LINC00963:5
4.1 LINC00963:5
5.0 LINC00963:5
5.1 LINC00963:5
5.2 LINC00963:5