Transcript: LINC00964:2

Basic information

LNCipedia transcript ID: LINC00964:2 
HGNC Gene Symbol: LINC00964    
HGNC Full Gene Name: long intergenic non-protein coding RNA 964
Ensembl Gene ID: ENSG00000249816
Ensembl Transcript ID: ENST00000528090
Location (hg38): chr8:124848766-124944612
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 572 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528090; ENST00000528090.1; RP11-6D1.6-003; OTTHUMT00000381821.1; NONHSAT128605; ENST00000528090.5
Alternative gene names: ENSG00000249816; ENSG00000249816.2; RP11-6D1.6; OTTHUMG00000165101.1; LINC00964; ENSG00000249816.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.5225 non-coding 
CPAT coding probability 9.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00964:2 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF572-1:2
3.1 lnc-ZNF572-1:2
4.0 LINC00964:2
4.1 LINC00964:2
5.0 LINC00964:2
5.1 LINC00964:2
5.2 LINC00964:2