Transcript: LINC00970:1

Basic information

LNCipedia transcript ID: LINC00970:1 
HGNC Gene Symbol: LINC00970    
HGNC Full Gene Name: long intergenic non-protein coding RNA 970
Ensembl Gene ID: ENSG00000203601
Ensembl Transcript ID: ENST00000366408
RefSeq ID: NR_104091
Location (hg38): chr1:168903905-169087005
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1129 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000366408.3; RP11-375F2.2-001; OTTHUMT00000083693.1; NONHSAT007450; NR_104091; NR_104091.1
Alternative gene names: ENSG00000203601.3; RP11-375F2.2; OTTHUMG00000034588.1; LINC00970;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.2781 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00970:1 no no no no

Available literature

  1. Yang (2013), The noncoding RNA expression profile and the effect of lncRNA AK126698 on cisplatin resistance in non-small-cell lung cancer cell., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NME7-1:1
4.0 LINC00970:1
4.1 LINC00970:1
5.0 LINC00970:1
5.1 LINC00970:1
5.2 LINC00970:1