Transcript: LINC00972:3

Basic information

LNCipedia transcript ID: LINC00972:3 
LNCipedia gene ID: LINC00972
RefSeq ID: NR_134240
Location (hg38): chr7:85421122-85489338
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 833 bp
Exons: 4
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_134240.1
Alternative gene names: LINC00972


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -125.7081 non-coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00972:3 no no no no

Available literature

  1. Du (2013), Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer., Nat. Struct. Mol. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC00972:3
5.1 LINC00972:3
5.2 LINC00972:3