Transcript: LINC00974:1

Basic information

LNCipedia transcript ID: LINC00974:1 
HGNC Gene Symbol: LINC00974    
HGNC Full Gene Name: long intergenic non-protein coding RNA 974
Ensembl Gene ID: ENSG00000226629
Ensembl Transcript ID: ENST00000456403
RefSeq ID: NR_038442
Location (hg38): chr17:41549606-41554495
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2141 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000456403; ENST00000456403.1; AC019349.2-001; OTTHUMT00000257715.1; NONHSAT053635; NR_038442; NR_038442.1
Alternative gene names: ENSG00000226629; AC019349.2; ENSG00000226629.1; OTTHUMG00000133607.1; LINC00974;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.4841 non-coding 
CPAT coding probability 35.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00974:1 no no no no

Available literature

  1. Huang (2015), Long non-coding RNA TUG1 is up-regulated in hepatocellular carcinoma and promotes cell growth and apoptosis by epigenetically silencing of KLF2., Mol. Cancer
  2. Tang (2014), A novel biomarker Linc00974 interacting with KRT19 promotes proliferation and metastasis in hepatocellular carcinoma., Cell Death Dis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KRT9-1:1
3.1 lnc-KRT9-1:1
4.0 LINC00974:1
4.1 LINC00974:1
5.0 LINC00974:1
5.1 LINC00974:1
5.2 LINC00974:1