Transcript: LINC00982:10

Basic information

LNCipedia transcript ID: LINC00982:10 
HGNC Gene Symbol: LINC00982    
HGNC Full Gene Name: long intergenic non-protein coding RNA 982
Ensembl Gene ID: ENSG00000177133
Ensembl Transcript ID: ENST00000420957
Location (hg38): chr1:3061959-3062395
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 435 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420957.1
Alternative gene names: ENSG00000177133.10; LINC00982; FLJ42875


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -118.3476 non-coding 
CPAT coding probability 25.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00982:10 no no no no

Available literature

  1. Fei (2016), Upregulated expression of long non-coding RNA LINC00982 regulates cell proliferation and its clinical relevance in patients with gastric cancer., Tumour Biol.
  2. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics
  3. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights
  4. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00982:10
4.1 LINC00982:10
5.0 LINC00982:10
5.1 LINC00982:10
5.2 LINC00982:10