Transcript: LINC00982:15

Basic information

LNCipedia transcript ID: LINC00982:15 
LNCipedia gene ID: LINC00982
Location (hg38): chr1:3059531-3060745
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 506 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001379; NONHSAT000492
Alternative gene names: XLOC_000682; linc-MMEL1-3; FLJ42875


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.319 non-coding 
CPAT coding probability 3.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00982:15 no no no no

Available literature

  1. Fei (2016), Upregulated expression of long non-coding RNA LINC00982 regulates cell proliferation and its clinical relevance in patients with gastric cancer., Tumour Biol.
  2. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics
  3. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights
  4. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC34-3:5
3.1 lnc-TTC34-3:9
4.0 LINC00982:15
4.1 LINC00982:15
5.0 LINC00982:15
5.1 LINC00982:15
5.2 LINC00982:15