Transcript: LINC00989:2

Basic information

LNCipedia transcript ID: LINC00989:2 
HGNC Gene Symbol: LINC00989    
HGNC Full Gene Name: long intergenic non-protein coding RNA 989
Ensembl Gene ID: ENSG00000250334
Ensembl Transcript ID: ENST00000515544
Location (hg38): chr4:79492593-79576458
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2052 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515544; ENST00000515544.1; RP11-234K19.2-002; OTTHUMT00000362790.1
Alternative gene names: ENSG00000250334; RP11-234K19.2; ENSG00000250334.1; OTTHUMG00000160884.1; LINC00989; ENSG00000250334.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.9073 non-coding 
CPAT coding probability 2.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00989:2 no no no no

Available literature

  1. Ye (2015), Evaluation of four genetic variants in han chinese subjects with high myopia., J Ophthalmol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BMP2K-2:2
3.1 lnc-BMP2K-3:2
4.0 LINC00989:2
4.1 LINC00989:2
5.0 LINC00989:2
5.1 LINC00989:2
5.2 LINC00989:2