Transcript: LINC01001:2

Basic information

LNCipedia transcript ID: LINC01001:2 
HGNC Gene Symbol: LINC01001    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1001
Ensembl Gene ID: ENSG00000230724
Ensembl Transcript ID: ENST00000527683
Location (hg38): chr11:133614-139117
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 683 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000527683; ENST00000527683.1; RP11-304M2.2-001; OTTHUMT00000381923.1; NONHSAT017192
Alternative gene names: ENSG00000230724; RP11-304M2.2; ENSG00000230724.3; OTTHUMG00000165114.2; ENSG00000230724.5; LINC01001; ENSG00000230724.9;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.399 non-coding 
CPAT coding probability 11.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01001:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BET1L-1:1
3.1 lnc-BET1L-1:1
4.0 LINC01001:2
4.1 LINC01001:2
5.0 LINC01001:2
5.1 LINC01001:2
5.2 LINC01001:2