Transcript: LINC01001:3

Basic information

LNCipedia transcript ID: LINC01001:3 
LNCipedia gene ID: LINC01001
Location (hg38): chr11:129531-139099
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2301 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000526704; ENST00000526704.1; RP11-304M2.2-002; OTTHUMT00000381921.2; NONHSAT017187
Alternative gene names: ENSG00000230724; RP11-304M2.2; ENSG00000230724.3; OTTHUMG00000165114.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 96.7952 coding 
CPAT coding probability 99.87% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01001:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BET1L-1:2
3.1 lnc-BET1L-1:2
4.0 LINC01001:3
4.1 LINC01001:3
5.0 LINC01001:3
5.1 LINC01001:3
5.2 LINC01001:3