Transcript: LINC01003:1

Basic information

LNCipedia transcript ID: LINC01003:1 
HGNC Gene Symbol: LINC01003    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1003
Ensembl Gene ID: ENSG00000261455
Ensembl Transcript ID: ENST00000564834
Location (hg38): chr7:152463786-152465549
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1764 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564834.1; RP5-1129J21.3-001; OTTHUMT00000423022.1; NONHSAT124273
Alternative gene names: ENSG00000261455.1; RP5-1129J21.3; OTTHUMG00000173415.1; LINC01003;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.2393 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01003:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACTR3B-1:1
4.0 LINC01003:1
4.1 LINC01003:1
5.0 LINC01003:1
5.1 LINC01003:1
5.2 LINC01003:1