Transcript: LINC01006:12

Basic information

LNCipedia transcript ID: LINC01006:12 
LNCipedia gene ID: LINC01006
RefSeq ID: NR_103858
Location (hg38): chr7:156472099-156603195
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 758 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT124417; NR_103858; NR_103858.1
Alternative gene names: MY040; LINC01006


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.4114 non-coding 
CPAT coding probability 1.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01006:12 no no no no

Available literature

  1. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LMBR1-2:10
4.0 LINC01006:12
4.1 LINC01006:12
5.0 LINC01006:12
5.1 LINC01006:12
5.2 LINC01006:12