Transcript: LINC01006:4

Basic information

LNCipedia transcript ID: LINC01006:4 
HGNC Gene Symbol: LINC01006    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1006
Ensembl Gene ID: ENSG00000182648
Ensembl Transcript ID: ENST00000458645
Location (hg38): chr7:156584160-156640592
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 738 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000458645.1; AC073871.2-005; OTTHUMT00000322645.1; NONHSAT124421; ENST00000458645.5
Alternative gene names: ENSG00000182648.7; AC073871.2; OTTHUMG00000141315.3; LINC01006; ENSG00000182648.11; MY040


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.7152 non-coding 
CPAT coding probability 2.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01006:4 no no no no

Available literature

  1. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LMBR1-2:1
4.0 LINC01006:4
4.1 LINC01006:4
5.0 LINC01006:4
5.1 LINC01006:4
5.2 LINC01006:4