Transcript: LINC01006:7

Basic information

LNCipedia transcript ID: LINC01006:7 
LNCipedia gene ID: LINC01006
Location (hg38): chr7:156603618-156605767
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 597 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000439364; ENST00000439364.1; RP5-982E9.1-003; OTTHUMT00000347787.1; NONHSAT124423
Alternative gene names: ENSG00000241558; RP5-982E9.1; ENSG00000241558.1; OTTHUMG00000157178.1; MY040


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.5155 non-coding 
CPAT coding probability 14.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01006:7 no no no no

Available literature

  1. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C7orf13-1:1
3.1 lnc-LMBR1-2:4
4.0 LINC01006:7
4.1 LINC01006:7
5.0 LINC01006:7
5.1 LINC01006:7
5.2 LINC01006:7