Transcript: LINC01007:8

Basic information

LNCipedia transcript ID: LINC01007:8 
HGNC Gene Symbol: LINC01007    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1007
Ensembl Gene ID: ENSG00000233123
Ensembl Transcript ID: ENST00000434537
Location (hg38): chr7:101565317-101568976
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2291 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434537; ENST00000434537.1; RP5-1059M17.1-001; OTTHUMT00000347577.1
Alternative gene names: ENSG00000233123; RP5-1059M17.1; ENSG00000233123.1; OTTHUMG00000157139.1; LINC01007;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.0944 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01007:8 no no no no

Available literature

  1. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYL10-1:4
3.1 lnc-MYL10-1:4
4.0 LINC01007:8
4.1 LINC01007:8
5.0 LINC01007:8
5.1 LINC01007:8
5.2 LINC01007:8