Transcript: LINC01019:2

Basic information

LNCipedia transcript ID: LINC01019:2 
HGNC Gene Symbol: LINC01019    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1019
Ensembl Gene ID: ENSG00000248118
Ensembl Transcript ID: ENST00000505443
RefSeq ID: NR_033898
Location (hg38): chr5:3417152-3536094
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3199 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000505443; ENST00000505443.1; RP11-121L11.1-001; OTTHUMT00000365543.1; NONHSAT100124; NR_033898; NR_033898.1
Alternative gene names: ENSG00000248118; RP11-121L11.1; ENSG00000248118.1; OTTHUMG00000161629.1; LINC01019;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.8095 non-coding 
CPAT coding probability 16.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01019:2 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRX2-4:2
3.1 lnc-IRX2-3:1
4.0 LINC01019:2
4.1 LINC01019:2
5.0 LINC01019:2
5.1 LINC01019:2
5.2 LINC01019:2