Transcript: LINC01036:27

Basic information

LNCipedia transcript ID: LINC01036:27 
LNCipedia gene ID: LINC01036
RefSeq ID: NR_132374
Location (hg38): chr1:187443628-187477222
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 424 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000352; ENST00000427337; ENST00000427337.1; RP11-445P19.1-002; OTTHUMT00000086170.1; NONHSAT008462; NR_132374.1
Alternative gene names: XLOC_000498; linc-RGS18-10; ENSG00000231599; RP11-445P19.1; ENSG00000231599.1; OTTHUMG00000035479.1; LINC01037;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.0521 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01036:27 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLA2G4A-2:2
3.1 lnc-PLA2G4A-2:2
4.0 LINC01037:2
4.1 LINC01037:2
5.0 LINC01037:2
5.1 LINC01036:18
5.2 LINC01036:27