Transcript: LINC01039:1

Basic information

LNCipedia transcript ID: LINC01039:1 
LNCipedia gene ID: LINC01039
Location (hg38): chr13:99577112-99580368
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 652 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021588; ENST00000437113; ENST00000437113.1; RP11-214F16.4-001; OTTHUMT00000045606.1; NONHSAT034928
Alternative gene names: XLOC_010479; linc-CLYBL; ENSG00000234168; RP11-214F16.4; ENSG00000234168.1; OTTHUMG00000017273.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.2508 non-coding 
CPAT coding probability 10.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01039:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TM9SF2-1:1
3.1 lnc-TM9SF2-1:1
4.0 LINC01039:1
4.1 LINC01039:1
5.0 LINC01039:1
5.1 LINC01039:1
5.2 LINC01039:1