Transcript: LINC01047:3

Basic information

LNCipedia transcript ID: LINC01047:3 
LNCipedia gene ID: LINC01047
Location (hg38): chr13:89214896-89220559
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 687 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021681; ENST00000445027; ENST00000445027.1; RP11-143O10.1-002; OTTHUMT00000045424.1; NONHSAT034624
Alternative gene names: XLOC_010684; linc-SLITRK6-3; ENSG00000232225; RP11-143O10.1; ENSG00000232225.1; OTTHUMG00000017173.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.474 non-coding 
CPAT coding probability 13.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01047:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK6-10:2
3.1 lnc-SLITRK6-10:2
4.0 LINC01047:3
4.1 LINC01047:3
5.0 LINC01047:3
5.1 LINC01047:3
5.2 LINC01047:3