Transcript: LINC01050:1

Basic information

LNCipedia transcript ID: LINC01050:1 
HGNC Gene Symbol: LINC01050    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1050
Ensembl Gene ID: ENSG00000271216
Ensembl Transcript ID: ENST00000604485
RefSeq ID: NR_125747
Location (hg38): chr13:42810366-42812562
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 760 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT033439; ENST00000604485.1; NR_125747; NR_125747.1
Alternative gene names: ENSG00000271216.1; LINC01050;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.0359 non-coding 
CPAT coding probability 2.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01050:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EPSTI1-7:1
4.0 LINC01050:1
4.1 LINC01050:1
5.0 LINC01050:1
5.1 LINC01050:1
5.2 LINC01050:1