Transcript: LINC01060:10

Basic information

LNCipedia transcript ID: LINC01060:10 
LNCipedia gene ID: LINC01060
Location (hg38): chr4:188455614-188485857
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 239 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00008381
Alternative gene names: XLOC_003834; linc-FRG1-10;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -273.883 non-coding 
CPAT coding probability 3.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01060:10 no no no no

Available literature

  1. Shi (2018), Loss of Linc01060 induces pancreatic cancer progression through vinculin-mediated focal adhesion turnover., Cancer Lett.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRIML1-3:8
3.1 lnc-TRIML1-3:8
4.0 LINC01060:10
4.1 LINC01060:10
5.0 LINC01060:10
5.1 LINC01060:10
5.2 LINC01060:10